> For the complete documentation index, see [llms.txt](https://swatplus.gitbook.io/io-docs/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://swatplus.gitbook.io/io-docs/theoretical-documentation.md). # Theoretical Documentation - [Section 1: Climate](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate.md) - [Chapter 1:1 Equations: Energy](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled.md) - [1:1.1 Sun-Earth Relationships](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/sun-earth-relationships.md) - [1:1.1.1 Distance between Earth and Sun](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/sun-earth-relationships/distance-between-earth-and-sun.md) - [1:1.1.2 Solar Declination](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/sun-earth-relationships/solar-declination.md) - [1:1.1.3 Solar Noon, Sunrise, Sunset, and Daylength](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/sun-earth-relationships/solar-noon-sunrise-sunset-and-daylength.md) - [1:1.2 Solar Radiation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/solar-radiation.md) - [1:1.2.1 Extraterrestrial Radiation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/solar-radiation/1-1.2.1-extraterrestrial-radiation.md) - [1:1.2.2 Solar Radiation under Cloudless Skies](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/solar-radiation/1-1.2.2-solar-radiation-under-cloudless-skies.md) - [1:1.2.3 Daily Solar Radiation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/solar-radiation/1-1.2.3-daily-solar-radiation.md) - [1:1.2.4 Hourly Solar Radiation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/solar-radiation/1-1.2.4-hourly-solar-radiation.md) - [1:1.2.5 Daily Net Radiation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/solar-radiation/1-1.2.5-daily-net-radiation.md) - [1:1.3 Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/1-1.3-temperature.md) - [1:1.3.1 Daily Air Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/1-1.3-temperature/1-1.3.1-daily-air-temperature.md) - [1:1.3.2 Hourly Air Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/1-1.3-temperature/1-1.3.2-hourly-air-temperature.md) - [1:1.3.3 Soil Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/1-1.3-temperature/1-1.3.3-soil-temperature.md) - [1:1.3.4 Water Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/1-1.3-temperature/1-1.3.4-water-temperature.md) - [1:1:4 Wind Speed](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/untitled/1-1-4-wind-speed.md) - [Chapter 1:2 Atmospheric Water](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water.md) - [1:2.1 Precipitation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water/1-2.1-precipitation.md) - [1:2.2 Maximum Half-Hour Rainfall](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water/1-2.2-maximum-half-hour-rainfall.md) - [1:2.3 Water Vapor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water/1-2.3-water-vapor.md) - [1:2.4 Snow Cover](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water/1-2.4-snow-cover.md) - [1:2.5 Snow Melt](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water/1-2.5-snow-melt.md) - [1:2.5.1 Snow Pack Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water/1-2.5-snow-melt/1-2.5.1-snow-pack-temperature.md) - [1:2.5.1.1 Snow Melt Equation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-2-atmospheric-water/1-2.5-snow-melt/1-2.5.1-snow-pack-temperature/1-2.5.1.1-snow-melt-equation.md) - [Chapter 1:3 Weather Generator](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator.md) - [1:3.1 Precipitation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.1-precipitation.md) - [1:3.1.1 Occurrence of Wet or Dry Day](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.1-precipitation/1-3.1.1-occurrence-of-wet-or-dry-day.md) - [1:3.1.2 Amount of Precipitation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.1-precipitation/1-3.1.2-amount-of-precipitation.md) - [1:3.2 Maximum Half-Hour Rainfall](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.2-maximum-half-hour-rainfall.md) - [1:3.2.1 Monthly Maximum Half-Hour Rain](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.2-maximum-half-hour-rainfall/1-3.2.1-monthly-maximum-half-hour-rain.md) - [1:3.2.2 Daily Maximum Half-Hour Rain Value](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.2-maximum-half-hour-rainfall/1-3.2.2-daily-maximum-half-hour-rain-value.md) - [1:3.3 Distribution of Rainfall Within Day](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.3-distribution-of-rainfall-within-day.md) - [1:3.3.1 Normalized Intensity Distribution](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.3-distribution-of-rainfall-within-day/1-3.3.1-normalized-intensity-distribution.md) - [1:3.3.2 Generated Time to Peak Intensity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.3-distribution-of-rainfall-within-day/1-3.3.2-generated-time-to-peak-intensity.md) - [1:3.3.3 Total Rainfall and Duration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.3-distribution-of-rainfall-within-day/1-3.3.3-total-rainfall-and-duration.md) - [1:3.4 Solar Radiation & Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.4-solar-radiation-and-temperature.md) - [1:3.4.1 Daily Residuals](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.4-solar-radiation-and-temperature/1-3.4.1-daily-residuals.md) - [1:3.4.2 Generated Values](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.4-solar-radiation-and-temperature/1-3.4.2-generated-values.md) - [1:3.4.3 Adjustment for Clear/Overcast Conditions](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.4-solar-radiation-and-temperature/1-3.4.3-adjustment-for-clear-overcast-conditions.md) - [1:3.4.3.1 Maximum Temperature](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.4-solar-radiation-and-temperature/1-3.4.3-adjustment-for-clear-overcast-conditions/1-3.4.3.1-maximum-temperature.md) - [1:3.4.3.2 Solar Radiation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.4-solar-radiation-and-temperature/1-3.4.3-adjustment-for-clear-overcast-conditions/1-3.4.3.2-solar-radiation.md) - [1:3.5 Relative Humidity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.5-relative-humidity.md) - [1:3.5.1 Mean Monthly Relative Humidity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.5-relative-humidity/1-3.5.1-mean-monthly-relative-humidity.md) - [1:3.5.2 Generated Daily Value](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.5-relative-humidity/1-3.5.2-generated-daily-value.md) - [1:3.5.3 Adjustment for Clear/Overcast Conditions](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.5-relative-humidity/1-3.5.3-adjustment-for-clear-overcast-conditions.md) - [1:3.6 Wind Speed](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-3-weather-generator/1-3.6-wind-speed.md) - [Chapter 1:4 Climate Customization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-4-climate-customization.md) - [1:4.1 Elevation Bands](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-4-climate-customization/1-4.1-elevation-bands.md) - [1:4.2 Climate Change](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-1-climate/chapter-1-4-climate-customization/1-4.2-climate-change.md) - [Section 2: Hydrology](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology.md) - [Chapter 2:1 Surface Runoff](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff.md) - [2:1.1 Runoff Volume: SCS Curve Number Procedure](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.1-runoff-volume-scs-curve-number-procedure.md) - [2:1.1.1 SCS Curve Number](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.1-runoff-volume-scs-curve-number-procedure/2-1.1.1-scs-curve-number.md) - [2:1.1.1.1 Soil Hydrologic Groups](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.1-runoff-volume-scs-curve-number-procedure/2-1.1.1-scs-curve-number/2-1.1.1.1-soil-hydrologic-groups.md) - [2:1.1.1.2 Antecedent Soil Moisture Condition](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.1-runoff-volume-scs-curve-number-procedure/2-1.1.1-scs-curve-number/2-1.1.1.2-antecedent-soil-moisture-condition.md) - [2:1.1.1.3 Retention Parameter](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.1-runoff-volume-scs-curve-number-procedure/2-1.1.1-scs-curve-number/2-1.1.1.3-retention-parameter.md) - [2:1.1.1.4 Slope Adjustments](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.1-runoff-volume-scs-curve-number-procedure/2-1.1.1-scs-curve-number/2-1.1.1.4-slope-adjustments.md) - [2:1.2 Runoff Volume: Green & Ampt Infiltration Method](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.2-runoff-volume-green-and-ampt-infiltration-method.md) - [2:1.3 Peak Runoff Rate](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.3-peak-runoff-rate.md) - [2:1.3.1 Time of Concentration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.3-peak-runoff-rate/2-1.3.1-time-of-concentration.md) - [2:1.3.1.1 Overland Flow Time of Concentration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.3-peak-runoff-rate/2-1.3.1-time-of-concentration/2-1.3.1.1-overland-flow-time-of-concentration.md) - [2:1.3.1.2 Channel Flow Time of Concentration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.3-peak-runoff-rate/2-1.3.1-time-of-concentration/2-1.3.1.2-channel-flow-time-of-concentration.md) - [2.1.3.2 Runoff Coefficient](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.3-peak-runoff-rate/2.1.3.2-runoff-coefficient.md) - [2:1.3.3 Rainfall Intensity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.3-peak-runoff-rate/2-1.3.3-rainfall-intensity.md) - [2:1.3.4 Modified Rational Formula](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.3-peak-runoff-rate/2-1.3.4-modified-rational-formula.md) - [2:1.4 Surface Runoff Lag](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.4-surface-runoff-lag.md) - [2:1.5 Transmission Losses](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-1-surface-runoff/2-1.5-transmission-losses.md) - [Chapter 2:2 Evapotranspiration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration.md) - [2:2.1 Canopy Storage](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.1-canopy-storage.md) - [2:2.2 Potential Evapotranspiration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration.md) - [2:2.2.1 Penman-Monteith Method](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.1-penman-monteith-method.md) - [2:2.2.1.1 Soil Heat Flux](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.1-penman-monteith-method/2-2.2.1.1-soil-heat-flux.md) - [2:2.2.1.2 Aerodynamic Resistance](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.1-penman-monteith-method/2-2.2.1.2-aerodynamic-resistance.md) - [2:2.2.1.3 Canopy Resistance](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.1-penman-monteith-method/2-2.2.1.3-canopy-resistance.md) - [2:2.2.1.4 Combined Term](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.1-penman-monteith-method/2-2.2.1.4-combined-term.md) - [2:2.2.2 Priestley-Taylor Method](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.2-priestley-taylor-method.md) - [2:2.2.3 Hargreaves Method](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.3-hargreaves-method.md) - [2:2.2.4 Reading Measured or Estimated PET](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.2-potential-evapotranspiration/2-2.2.4-reading-measured-or-estimated-pet.md) - [2:2.3 Actual Evapotranspiration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.3-actual-evapotranspiration.md) - [2:2.3.1 Evaporation of Intercepted Rainfall](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.3-actual-evapotranspiration/2-2.3.1-evaporation-of-intercepted-rainfall.md) - [2:2.3.2 Transpiration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.3-actual-evapotranspiration/2-2.3.2-transpiration.md) - [2:2.3.3 Sublimation and Evaporation from the Soil](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.3-actual-evapotranspiration/2-2.3.3-sublimation-and-evaporation-from-the-soil.md) - [2:2.3.3.1 Sublimation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.3-actual-evapotranspiration/2-2.3.3-sublimation-and-evaporation-from-the-soil/2-2.3.3.1-sublimation.md) - [2:2.3.3.2 Soil Water Evaporation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.3-actual-evapotranspiration/2-2.3.3-sublimation-and-evaporation-from-the-soil/2-2.3.3.2-soil-water-evaporation.md) - [2:2.3.4 Evaporation from Ponded Water](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-2-evapotranspiration/2-2.3-actual-evapotranspiration/2-2.3.4-evaporation-from-ponded-water.md) - [Chapter 2:3 Soil Water](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-3-soil-water.md) - [2:3.1 Soil Structure](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-3-soil-water/2-3.1-soil-structure.md) - [2:3.2 Percolation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-3-soil-water/2-3.2-percolation.md) - [2:3.3 Bypass Flow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-3-soil-water/2-3.3-bypass-flow.md) - [2:3.4 Perched Water Table](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-3-soil-water/2-3.4-perched-water-table.md) - [2:3.5 Lateral Flow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-3-soil-water/2-3.5-lateral-flow.md) - [2:3.4.1 Lateral Flow Lag](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-3-soil-water/2-3.5-lateral-flow/2-3.4.1-lateral-flow-lag.md) - [Chapter 2:4 Groundwater](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater.md) - [2:4.1 Groundwater Systems](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.1-groundwater-systems.md) - [2:4.2 Shallow Aquifer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.2-shallow-aquifer.md) - [2:4.2.1 Recharge](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.2-shallow-aquifer/2-4.2.1-recharge.md) - [2:4.2.2 Partitioning of Recharge Between Shallow and Deep Aquifer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.2-shallow-aquifer/2-4.2.2-partitioning-of-recharge-between-shallow-and-deep-aquifer.md) - [2:4.2.3 Groundwater/Base Flow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.2-shallow-aquifer/2-4.2.3-groundwater-base-flow.md) - [2:4.2.4 Revap](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.2-shallow-aquifer/2-4.2.4-revap.md) - [2:4.2.5 Pumping](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.2-shallow-aquifer/2-4.2.5-pumping.md) - [2:4.2.6 Groundwater Height](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.2-shallow-aquifer/2-4.2.6-groundwater-height.md) - [2:4.3 Deep Aquifer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-2-hydrology/chapter-2-4-groundwater/2-4.3-deep-aquifer.md) - [Section 3: Nutrients/Pesticides](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides.md) - [Chapter 3:1 Nitrogen](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen.md) - [3:1.1 Nitrogen Cycle in the Soil](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.1-nitrogen-cycle-in-the-soil.md) - [3:1.1.1 Initialization of Soil Nitrogen Levels](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.1-nitrogen-cycle-in-the-soil/3-1.1.1-initialization-of-soil-nitrogen-levels.md) - [3:1.2 Mineralization & Decomposition / Immobilization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.2-mineralization-and-decomposition-immobilization.md) - [3:1.2.1 Humus Mineralization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.2-mineralization-and-decomposition-immobilization/3-1.2.1-humus-mineralization.md) - [3:1.2.2 Residue Decomposition & Mineralization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.2-mineralization-and-decomposition-immobilization/3-1.2.2-residue-decomposition-and-mineralization.md) - [3:1.3 Nitrification & Ammonia Volatilization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.3-nitrification-and-ammonia-volatilization.md) - [3:1.4 Denitrification](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.4-denitrification.md) - [3:1.5 Atmospheric Deposition](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.5-atmospheric-deposition.md) - [3:1.5.1 Nitrogen in Rainfall](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.5-atmospheric-deposition/3-1.5.1-nitrogen-in-rainfall.md) - [3:1.5.2 Nitrogen Dry Deposition](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.5-atmospheric-deposition/3-1.5.2-nitrogen-dry-deposition.md) - [3:1.6 Fixation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.6-fixation.md) - [3:1.7 Upward Movement of Nitrate in Water](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.7-upward-movement-of-nitrate-in-water.md) - [3:1.8 Leaching](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.8-leaching.md) - [3:1.9 Nitrate in the Shallow Aquifer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/chapter-3-1-nitrogen/3-1.9-nitrate-in-the-shallow-aquifer.md) - [Phosphorus](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus.md) - [Phosphorus Cycle](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/phosphorus-cycle.md) - [Initialization of Soil Phosphorus Levels](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/phosphorus-cycle/initialization-of-soil-phosphorus-levels.md) - [Mineralization & Decomposition / Immobilization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/mineralization-and-decomposition-immobilization.md) - [Humus Mineralization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/mineralization-and-decomposition-immobilization/humus-mineralization.md) - [Residue Decomposition & Mineralization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/mineralization-and-decomposition-immobilization/residue-decomposition-and-mineralization.md) - [Sorption of Inorganic P](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/sorption-of-inorganic-p.md) - [Leaching](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/leaching.md) - [Phosphorus in the Shallow Aquifer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/phosphorus/phosphorus-in-the-shallow-aquifer.md) - [Pesticides](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/pesticides.md) - [Wash-off](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/pesticides/wash-off.md) - [Degradation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/pesticides/degradation.md) - [Leaching](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/pesticides/leaching.md) - [Bacteria](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/bacteria.md) - [Wash-off](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/bacteria/wash-off.md) - [Bacteria Die-off/Re-growth](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/bacteria/bacteria-die-off-re-growth.md) - [Leaching](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/bacteria/leaching.md) - [Carbon](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/carbon.md) - [Sub-model Description](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/carbon/sub-model-description.md) - [Changes from previous version](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/carbon/changes-from-previous-version.md) - [Analytical Solutions](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-3-nutrients-pesticides/carbon/analytical-solutions.md) - [Section 4: Erosion](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion.md) - [Sediment](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment.md) - [MUSLE](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/musle.md) - [Soil Erodibility Factor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/musle/soil-erodibility-factor.md) - [Cover and Management Factor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/musle/cover-and-management-factor.md) - [Support Practice Factor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/musle/support-practice-factor.md) - [Topographic Factor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/musle/topographic-factor.md) - [Coarse Fragment Factor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/musle/coarse-fragment-factor.md) - [USLE](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/usle.md) - [Rainfall Erodibility Index](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/usle/rainfall-erodibility-index.md) - [Snow Cover Effects](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/snow-cover-effects.md) - [Sediment Lag in Surface Runoff](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/sediment-lag-in-surface-runoff.md) - [Sediment in Lateral & Groundwater Flow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/sediment/sediment-in-lateral-and-groundwater-flow.md) - [Nutrient Transport](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport.md) - [Nitrate Movement](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport/nitrate-movement.md) - [Organic N in Surface Runoff](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport/organic-n-in-surface-runoff.md) - [Enrichment Ratio](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport/organic-n-in-surface-runoff/enrichment-ratio.md) - [Soluble Phosphorus Movement](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport/soluble-phosphorus-movement.md) - [Organic & Mineral P Attached to Sediment in Surface Runoff](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport/organic-and-mineral-p-attached-to-sediment-in-surface-runoff.md) - [Enrichment Ratio](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport/organic-and-mineral-p-attached-to-sediment-in-surface-runoff/enrichment-ratio.md) - [Nutrient Lag in Surface Runoff and Lateral Flow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/nutrient-transport/nutrient-lag-in-surface-runoff-and-lateral-flow.md) - [Pesticide Transport](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/pesticide-transport.md) - [Phase Distribution of Pesticide](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/pesticide-transport/phase-distribution-of-pesticide.md) - [Movement of Soluble Pesticide](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/pesticide-transport/movement-of-soluble-pesticide.md) - [Transport of Sorbed Pesticide](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/pesticide-transport/transport-of-sorbed-pesticide.md) - [Enrichment Ratio](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/pesticide-transport/transport-of-sorbed-pesticide/enrichment-ratio.md) - [Pesticide Lag in Surface Runoff and Lateral Flow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/pesticide-transport/pesticide-lag-in-surface-runoff-and-lateral-flow.md) - [Bacteria Transport](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/bacteria-transport.md) - [Bacteria in Surface Runoff](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/bacteria-transport/bacteria-in-surface-runoff.md) - [Bacteria Attached to Sediment in Surface Runoff](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/bacteria-transport/bacteria-attached-to-sediment-in-surface-runoff.md) - [Enrichment Ratio](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/bacteria-transport/bacteria-attached-to-sediment-in-surface-runoff/enrichment-ratio.md) - [Bacteria Lag in Surface Runoff](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/bacteria-transport/bacteria-lag-in-surface-runoff.md) - [Water Quality Parameters](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/water-quality-parameters.md) - [Algae](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/water-quality-parameters/algae.md) - [Carbonaceous Biological Oxygen Demand](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/water-quality-parameters/carbonaceous-biological-oxygen-demand.md) - [Enrichment Ratio](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/water-quality-parameters/carbonaceous-biological-oxygen-demand/enrichment-ratio.md) - [Dissolved Oxygen](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/water-quality-parameters/dissolved-oxygen.md) - [Oxygen Saturation Concentration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-4-erosion/water-quality-parameters/dissolved-oxygen/oxygen-saturation-concentration.md) - [Section 5: Land Cover/Plant](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant.md) - [Growth Cycle](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/growth-cycle.md) - [Heat Units](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/growth-cycle/heat-units.md) - [Heat Unit Scheduling](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/growth-cycle/heat-units/heat-unit-scheduling.md) - [Dormancy](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/growth-cycle/dormancy.md) - [Plant Types](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/growth-cycle/plant-types.md) - [Optimal Growth](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth.md) - [Potential Growth](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/potential-growth.md) - [Biomass Production](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/potential-growth/biomass-production.md) - [Impact of Climate on Radiation-Use Efficiency](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/potential-growth/biomass-production/impact-of-climate-on-radiation-use-efficiency.md) - [Modification of Biomass Calculation for Trees](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/potential-growth/biomass-production/modification-of-biomass-calculation-for-trees.md) - [Canopy Cover and Height](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/potential-growth/canopy-cover-and-height.md) - [Root Development](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/potential-growth/root-development.md) - [Maturity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/potential-growth/maturity.md) - [Water Uptake by Plants](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/water-uptake-by-plants.md) - [Impact of Low Soil Water Content](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/water-uptake-by-plants/impact-of-low-soil-water-content.md) - [Actual Water Uptake](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/water-uptake-by-plants/actual-water-uptake.md) - [Nutrient Uptake by Plants](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/nutrient-uptake-by-plants.md) - [Nitrogen Uptake](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/nutrient-uptake-by-plants/nitrogen-uptake.md) - [Nitrogen Fixation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/nutrient-uptake-by-plants/nitrogen-uptake/nitrogen-fixation.md) - [Phosphorus Uptake](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/nutrient-uptake-by-plants/phosphorus-uptake.md) - [Crop Yield](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/optimal-growth/crop-yield.md) - [Actual Growth](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth.md) - [Growth Constraints](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/growth-constraints.md) - [Water Stress](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/growth-constraints/water-stress.md) - [Temperature Stress](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/growth-constraints/temperature-stress.md) - [Nitrogen Stress](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/growth-constraints/nitrogen-stress.md) - [Phosphorus Stress](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/growth-constraints/phosphorus-stress.md) - [Actual Growth](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/actual-growth.md) - [Biomass Override](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/actual-growth/biomass-override.md) - [Actual Yield](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/actual-yield.md) - [Harvest Index Override](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/actual-yield/harvest-index-override.md) - [Harvest Efficiency](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-5-land-cover-plant/actual-growth/actual-yield/harvest-efficiency.md) - [Section 6: Management Practices](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices.md) - [General Management](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management.md) - [Planting/Beginning of Growing Season](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/planting-beginning-of-growing-season.md) - [Harvest Operation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/harvest-operation.md) - [Grazing Operation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/grazing-operation.md) - [Harvest & Kill Operation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/harvest-and-kill-operation.md) - [Kill/End of Growing Season](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/kill-end-of-growing-season.md) - [Tillage](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/tillage.md) - [Biological Mixing](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/tillage/biological-mixing.md) - [Fertilizer Application](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/fertilizer-application.md) - [Auto-Application of Fertilizer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/auto-application-of-fertilizer.md) - [Continuous Application of Fertilizer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/continuous-application-of-fertilizer.md) - [Pesticide Application](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/general-management/pesticide-application.md) - [Water Management](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management.md) - [Irrigation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/irrigation.md) - [Manual Application of Irrigation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/irrigation/manual-application-of-irrigation.md) - [Auto-Application of Irrigation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/irrigation/auto-application-of-irrigation.md) - [Tile Drainage](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/tile-drainage.md) - [Impounded/Depressional Areas](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/impounded-depressional-areas.md) - [Water Transfer](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/water-transfer.md) - [Consumptive Water Use](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/consumptive-water-use.md) - [Point Source Loadings](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/water-management/point-source-loadings.md) - [Urban Areas](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/urban-areas.md) - [Characteristics of Urban Areas](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/urban-areas/characteristics-of-urban-areas.md) - [Surface Runoff from Urban Areas](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/urban-areas/surface-runoff-from-urban-areas.md) - [USGS Regression Equations](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/urban-areas/usgs-regression-equations.md) - [Build Up/Wash Off](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/urban-areas/build-up-wash-off.md) - [Street Cleaning](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/urban-areas/build-up-wash-off/street-cleaning.md) - [Septic Systems](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems.md) - [Biozone Algorithm](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm.md) - [Buildup of Live Bacterial Biomass](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/buildup-of-live-bacterial-biomass.md) - [Fate and Transport of Bacterial Biomass](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/fate-and-transport-of-bacterial-biomass.md) - [Field Capacity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/field-capacity.md) - [Clogging Effect on Hydraulic Conductivity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/clogging-effect-on-hydraulic-conductivity.md) - [Soil Moisture and Percolation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/soil-moisture-and-percolation.md) - [Nitrogen, BOD, Fecal Coliform](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/nitrogen-bod-fecal-coliform.md) - [Phosphorus Removal](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/phosphorus-removal.md) - [Model Assumptions](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/biozone-algorithm/model-assumptions.md) - [Integration of Biozone Algorithm](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/integration-of-biozone-algorithm.md) - [Simulating Active and Failing Systems](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/septic-systems/integration-of-biozone-algorithm/simulating-active-and-failing-systems.md) - [Filter Strips and Grassed Waterways](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways.md) - [Filter Strips](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips.md) - [Empirical Model Development](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/empirical-model-development.md) - [Sediment Reduction Model](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/sediment-reduction-model.md) - [Nutrient Reduction Models](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/nutrient-reduction-models.md) - [Total Nitrogen](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/nutrient-reduction-models/total-nitrogen.md) - [Nitrate Nitrogen](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/nutrient-reduction-models/nitrate-nitrogen.md) - [Total Phosphorus](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/nutrient-reduction-models/total-phosphorus.md) - [Soluble Phosphorus](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/nutrient-reduction-models/soluble-phosphorus.md) - [VFS SWAT+ Model Structure](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/filter-strips/vfs-swat+-model-structure.md) - [Grassed Waterways](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-6-management-practices/filter-strips-and-grassed-waterways/grassed-waterways.md) - [Section 7: Main Channel Processes](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes.md) - [Water Routing](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing.md) - [Channel Characteristics](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/channel-characteristics.md) - [Flow Rate and Velocity](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/flow-rate-and-velocity.md) - [Variable Storage Routing Method](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/variable-storage-routing-method.md) - [Muskingum Routing Method](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/muskingum-routing-method.md) - [Transmission Losses](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/transmission-losses.md) - [Evaporation Losses](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/evaporation-losses.md) - [Bank Storage](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/bank-storage.md) - [Channel Water Balance](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/water-routing/channel-water-balance.md) - [Sediment Routing](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing.md) - [Landscape Contribution to Subbasin Routing Reach](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing/landscape-contribution-to-subbasin-routing-reach.md) - [Sediment Routing In Stream Channels](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing/sediment-routing-in-stream-channels.md) - [Simplified Bagnold Equation (Default method)](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing/sediment-routing-in-stream-channels/simplified-bagnold-equation-default-method.md) - [Physics Based Approach for Channel Erosion](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing/sediment-routing-in-stream-channels/physics-based-approach-for-channel-erosion.md) - [Channel Erodibility Factor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing/channel-erodibility-factor.md) - [Channel Cover Factor](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing/channel-cover-factor.md) - [Channel Downcutting and Widening](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/sediment-routing/channel-downcutting-and-widening.md) - [In-Stream Nutrient Processes](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes.md) - [Algae](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/algae.md) - [Chlorophyll a](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/algae/chlorophyll-a.md) - [Algal Growth](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/algae/algal-growth.md) - [Local Specific Growth Rate of Algae](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/algae/algal-growth/local-specific-growth-rate-of-algae.md) - [Local Respiration Rate of Algae](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/algae/algal-growth/local-respiration-rate-of-algae.md) - [Local Settling Rate of Algae](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/algae/algal-growth/local-settling-rate-of-algae.md) - [Nitrogen Cycle](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/nitrogen-cycle.md) - [Organic Nitrogen](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/nitrogen-cycle/organic-nitrogen.md) - [Ammonium](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/nitrogen-cycle/ammonium.md) - [Nitrite](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/nitrogen-cycle/nitrite.md) - [Nitrate](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/nitrogen-cycle/nitrate.md) - [Phosphorus Cycle](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/phosphorus-cycle.md) - [Organic Phosphorus](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/phosphorus-cycle/organic-phosphorus.md) - [Inorganic/Soluble Phosphorus](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/phosphorus-cycle/inorganic-soluble-phosphorus.md) - [Carbonaceous Biological Oxygen Demand](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/carbonaceous-biological-oxygen-demand.md) - [Oxygen](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/oxygen.md) - [Oxygen Saturation Concentration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/oxygen/oxygen-saturation-concentration.md) - [Reaeration](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/oxygen/reaeration.md) - [Reaeration By Fickian Diffusion](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/oxygen/reaeration/reaeration-by-fickian-diffusion.md) - [Reaeration By Turbulent Flow Over A Dam](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-nutrient-processes/oxygen/reaeration/reaeration-by-turbulent-flow-over-a-dam.md) - [In-Stream Pesticide Transformations](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations.md) - [Pesticide In The Water](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-water.md) - [Solid-Liquid Partitioning](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-water/solid-liquid-partitioning.md) - [Degradation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-water/degradation.md) - [Volatilization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-water/volatilization.md) - [Settling](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-water/settling.md) - [Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-water/outflow.md) - [Pesticide In The Sediment](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-sediment.md) - [Solid-Liquid Partitioning](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-sediment/solid-liquid-partitioning.md) - [Degradation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-sediment/degradation.md) - [Resuspension](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-sediment/resuspension.md) - [Diffusion](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-sediment/diffusion.md) - [Burial](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/pesticide-in-the-sediment/burial.md) - [Mass Balance](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/in-stream-pesticide-transformations/mass-balance.md) - [Bacteria Routing](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/bacteria-routing.md) - [Bacteria Decay](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/bacteria-routing/bacteria-decay.md) - [Bacteria Sediment](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/bacteria-routing/bacteria-sediment.md) - [Heavy Metal Routing](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-7-main-channel-processes/heavy-metal-routing.md) - [Section 8: Water Bodies](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies.md) - [Impoundment Water Routing](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing.md) - [Reservoirs](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs.md) - [Surface Area](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/surface-area.md) - [Precipitation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/precipitation.md) - [Evaporation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/evaporation.md) - [Seepage](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/seepage.md) - [Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/outflow.md) - [Measured Daily Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/outflow/measured-daily-outflow.md) - [Measured Monthly Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/outflow/measured-monthly-outflow.md) - [Average Annual Release Rate For Uncontrolled Reservoir](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/outflow/average-annual-release-rate-for-uncontrolled-reservoir.md) - [Target Release For Controlled Reservoir](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/reservoirs/outflow/target-release-for-controlled-reservoir.md) - [Ponds/Wetlands](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands.md) - [Surface Area](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/surface-area.md) - [Precipitation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/precipitation.md) - [Inflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/inflow.md) - [Evaporation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/evaporation.md) - [Seepage](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/seepage.md) - [Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/outflow.md) - [Pond Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/outflow/pond-outflow.md) - [Wetland Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/ponds-wetlands/outflow/wetland-outflow.md) - [Depressions/Potholes](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes.md) - [Surface Area](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/surface-area.md) - [Precipitation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/precipitation.md) - [Inflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/inflow.md) - [Evaporation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/evaporation.md) - [Seepage](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/seepage.md) - [Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/outflow.md) - [Overflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/outflow/overflow.md) - [Release Operation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/outflow/release-operation.md) - [Tile Flow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/impoundment-water-routing/depressions-potholes/outflow/tile-flow.md) - [Sediment In Water Bodies](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/sediment-in-water-bodies.md) - [Mass Balance](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/sediment-in-water-bodies/mass-balance.md) - [Settling](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/sediment-in-water-bodies/settling.md) - [Sediment Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/sediment-in-water-bodies/sediment-outflow.md) - [Nutrients In Water Bodies](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/nutrients-in-water-bodies.md) - [Nutrient Transformations](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/nutrients-in-water-bodies/nutrient-transformations.md) - [Total Balance](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/nutrients-in-water-bodies/total-balance.md) - [Eutrophication](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/nutrients-in-water-bodies/eutrophication.md) - [Phosphorus/Chlorophyll a Correlations](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/nutrients-in-water-bodies/eutrophication/phosphorus-chlorophyll-a-correlations.md) - [Pesticides In Water Bodies](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies.md) - [Pesticide In The Water](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-water.md) - [Solid-Liquid Partitioning](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-water/solid-liquid-partitioning.md) - [Degradation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-water/degradation.md) - [Volatilization](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-water/volatilization.md) - [Settling](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-water/settling.md) - [Outflow](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-water/outflow.md) - [Pesticide In The Sediment](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-sediment.md) - [Solid-Liquid Partitioning](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-sediment/solid-liquid-partitioning.md) - [Degradation](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-sediment/degradation.md) - [Resuspension](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-sediment/resuspension.md) - [Diffusion](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-sediment/diffusion.md) - [Burial](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/pesticide-in-the-sediment/burial.md) - [Mass Balance](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/pesticides-in-water-bodies/mass-balance.md) - [Bacteria In Water Bodies](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/bacteria-in-water-bodies.md) - [Bacteria Decay](https://swatplus.gitbook.io/io-docs/theoretical-documentation/section-8-water-bodies/bacteria-in-water-bodies/bacteria-decay.md) - [References](https://swatplus.gitbook.io/io-docs/theoretical-documentation/references.md)